{
  "_id": "6a1ea508b25058d4daad8529",
  "Type": "Package",
  "Package": "UBayFS",
  "Title": "A User-Guided Bayesian Framework for Ensemble Feature Selection\n(UBayFS)",
  "Version": "1.0",
  "Authors@R": "c(\nperson(\"Anna\", \"Jenul\", , \"anna.jenul@nmbu.no\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6919-3483\")),\nperson(\"Stefan\", \"Schrunner\", , \"stefan.schrunner@nmbu.no\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-1327-4855\")),\nperson(\"Kristian Hovde\", \"Liland\", role = \"rev\"),\nperson(\"Oliver\", \"Tomic\", role = \"ctb\"),\nperson(\"Jürgen\", \"Pilz\", role = \"ctb\")\n)",
  "Description": "Implements the user-guided Bayesian framework for ensemble\nfeature selection (UBayFS) : Jenul et al., (2022)\n<doi:10.1007/s10994-022-06221-9>.",
  "License": "GPL-3",
  "URL": "https://annajenul.github.io/UBayFS/",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.2.3",
  "Config/pak/sysreqs": "cmake libglpk-dev libgmp3-dev make libuv1-dev\nlibxml2-dev pkg-config zlib1g-dev libclang-dev",
  "Repository": "https://annajenul.r-universe.dev",
  "Date/Publication": "2023-07-13 08:50:46 UTC",
  "RemoteUrl": "https://github.com/annajenul/ubayfs",
  "RemoteRef": "HEAD",
  "RemoteSha": "bb699ba57c2816747a01c51a06d4033794579835",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-02 09:35:15 UTC",
    "User": "root"
  },
  "Author": "Anna Jenul [aut, cre] (ORCID: <https://orcid.org/0000-0002-6919-3483>),\nStefan Schrunner [aut] (ORCID: <https://orcid.org/0000-0003-1327-4855>),\nKristian Hovde Liland [rev],\nOliver Tomic [ctb],\nJürgen Pilz [ctb]",
  "Maintainer": "Anna Jenul <anna.jenul@nmbu.no>",
  "MD5sum": "a049d8ac9a3611320e3be80c8d5456f7",
  "_user": "annajenul",
  "_type": "src",
  "_file": "UBayFS_1.0.tar.gz",
  "_fileid": "16e5a5914d4f0c9e941c032e85c89b54291be1c50e61c09f03f5d519de24b7e9",
  "_filesize": 1961008,
  "_sha256": "16e5a5914d4f0c9e941c032e85c89b54291be1c50e61c09f03f5d519de24b7e9",
  "_created": "2026-06-02T09:35:15.000Z",
  "_published": "2026-06-02T09:40:24.814Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79041832061,
      "time": 244,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7354209648"
    },
    {
      "job": 79041832070,
      "time": 248,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7354211104"
    },
    {
      "job": 79041832028,
      "time": 178,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7354178021"
    },
    {
      "job": 79041832036,
      "time": 237,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7354193270"
    },
    {
      "job": 79040912144,
      "time": 315,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7354118557"
    },
    {
      "job": 79041832079,
      "time": 179,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7354185342"
    },
    {
      "job": 79041832134,
      "time": 158,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7354178767"
    },
    {
      "job": 79041832113,
      "time": 154,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7354177294"
    },
    {
      "job": 79041832051,
      "time": 153,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7354176877"
    }
  ],
  "_buildurl": "https://github.com/r-universe/annajenul/actions/runs/26811049308",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/annajenul/ubayfs",
  "_commit": {
    "id": "bb699ba57c2816747a01c51a06d4033794579835",
    "author": "Anna Jenul <anna.jenul@gmail.com>",
    "committer": "Anna Jenul <anna.jenul@gmail.com>",
    "message": "add citation file\n",
    "time": 1689238246
  },
  "_maintainer": {
    "name": "Anna Jenul",
    "email": "anna.jenul@nmbu.no",
    "login": "annajenul",
    "linkedin": "in/anna-jenul-30150917a",
    "description": "Data Scientist                                     ",
    "uuid": 60505157,
    "orcid": "0000-0002-6919-3483"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "DirichletReg",
      "role": "Imports"
    },
    {
      "package": "GA",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "role": "Imports"
    },
    {
      "package": "hyper2",
      "role": "Imports"
    },
    {
      "package": "matrixStats",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "mRMRe",
      "role": "Imports"
    },
    {
      "package": "prettydoc",
      "role": "Imports"
    },
    {
      "package": "Rdimtools",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "caret",
      "role": "Suggests"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "DT",
      "role": "Suggests"
    },
    {
      "package": "glmnet",
      "role": "Suggests"
    },
    {
      "package": "GSelection",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "plyr",
      "role": "Suggests"
    },
    {
      "package": "RColorBrewer",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "rpart",
      "role": "Suggests"
    },
    {
      "package": "shinyalert",
      "role": "Suggests"
    },
    {
      "package": "shinyBS",
      "role": "Suggests"
    },
    {
      "package": "shinyjs",
      "role": "Suggests"
    },
    {
      "package": "shinyWidgets",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "annajenul",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "bayesian-statistics",
    "ensemble-models",
    "feature-selection",
    "user-knowledge"
  ],
  "_stars": 5,
  "_contributors": [
    {
      "user": "annajenul",
      "count": 244,
      "uuid": 60505157
    },
    {
      "user": "sschrunner",
      "count": 10,
      "uuid": 63093769
    },
    {
      "user": "aaronpeikert",
      "count": 3,
      "uuid": 29424409
    }
  ],
  "_userbio": {
    "uuid": 60505157,
    "type": "user",
    "name": "Anna Jenul",
    "description": "Data Scientist                                     "
  },
  "_downloads": {
    "count": 144,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/UBayFS"
  },
  "_devurl": "https://github.com/annajenul/ubayfs",
  "_pkgdown": "https://annajenul.github.io/UBayFS/",
  "_searchresults": 13,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/UBayFS.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/annajenul/ubayfs",
  "_realowner": "annajenul",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2023-03-07"
    }
  ],
  "_exports": [
    "admissibility",
    "build.UBayconstraint",
    "build.UBaymodel",
    "buildConstraints",
    "buildDecorrConstraints",
    "evaluateFS",
    "evaluateMultiple",
    "is.UBayconstraint",
    "is.UBaymodel",
    "printResults",
    "runInteractive",
    "setConstraints",
    "setOptim",
    "setWeights",
    "train"
  ],
  "_datasets": [
    {
      "name": "bcw",
      "title": "Breast Cancer Wisconsin dataset",
      "object": "bcw",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "bcw",
      "title": "Breast Cancer Wisconsin dataset",
      "topics": [
        "bcw"
      ]
    },
    {
      "page": "build_train_set",
      "title": "Perform stratified data partition.",
      "topics": [
        "build_train_set"
      ]
    },
    {
      "page": "build.UBayconstraint",
      "title": "Build a customized constraint for UBayFS",
      "topics": [
        "build.UBayconstraint"
      ]
    },
    {
      "page": "build.UBaymodel",
      "title": "Build an ensemble for UBayFS",
      "topics": [
        "build.UBaymodel"
      ]
    },
    {
      "page": "buildConstraints",
      "title": "Build a constraint system",
      "topics": [
        "buildConstraints"
      ]
    },
    {
      "page": "buildDecorrConstraints",
      "title": "Build decorrelation constraints",
      "topics": [
        "buildDecorrConstraints"
      ]
    },
    {
      "page": "evaluateFS",
      "title": "Evaluate a feature set",
      "topics": [
        "evaluateFS",
        "evaluateMultiple"
      ]
    },
    {
      "page": "admissibility",
      "title": "Admissibility for constraint group",
      "topics": [
        "admissibility",
        "group_admissibility"
      ]
    },
    {
      "page": "is.UBayconstraint",
      "title": "Checks whether a list object implements proper UBayFS user constraints",
      "topics": [
        "is.UBayconstraint"
      ]
    },
    {
      "page": "is.UBaymodel",
      "title": "Check whether an object is a UBaymodel",
      "topics": [
        "is.UBaymodel"
      ]
    },
    {
      "page": "posteriorExpectation",
      "title": "Posterior expectation of features",
      "topics": [
        "posteriorExpectation"
      ]
    },
    {
      "page": "print.UBayconstraint",
      "title": "Prints the `UBayconstraint` object",
      "topics": [
        "print.UBayconstraint",
        "summary.UBayconstraint"
      ]
    },
    {
      "page": "print.UBaymodel",
      "title": "Print a UBayFS model",
      "topics": [
        "plot.UBaymodel",
        "print.UBaymodel",
        "printResults",
        "summary.UBaymodel"
      ]
    },
    {
      "page": "runInteractive",
      "title": "Run an interactive Shiny app for demonstration",
      "topics": [
        "runInteractive"
      ]
    },
    {
      "page": "sampleInitial",
      "title": "Initial feature set sampling using probabilistic Greedy algorithm",
      "topics": [
        "sampleInitial"
      ]
    },
    {
      "page": "setConstraints",
      "title": "Set constraints in UBaymodel object",
      "topics": [
        "setConstraints"
      ]
    },
    {
      "page": "setOptim",
      "title": "Set optimization parameters in a UBaymodel object",
      "topics": [
        "setOptim"
      ]
    },
    {
      "page": "setWeights",
      "title": "Set weights in UBaymodel object",
      "topics": [
        "setWeights"
      ]
    },
    {
      "page": "train",
      "title": "UBayFS feature selection",
      "topics": [
        "train"
      ]
    }
  ],
  "_readme": "https://github.com/annajenul/ubayfs/raw/HEAD/README.md",
  "_rundeps": [
    "ADMM",
    "alabama",
    "backports",
    "base64enc",
    "bslib",
    "cachem",
    "calibrator",
    "checkmate",
    "clarabel",
    "cli",
    "cluster",
    "codetools",
    "commonmark",
    "cpp11",
    "crayon",
    "cubature",
    "CVXR",
    "dbscan",
    "digest",
    "DirichletReg",
    "disordR",
    "doParallel",
    "emulator",
    "evaluate",
    "farver",
    "fastcluster",
    "fastmap",
    "fontawesome",
    "foreach",
    "Formula",
    "fs",
    "GA",
    "generics",
    "ggplot2",
    "glue",
    "gmp",
    "gridExtra",
    "gsignal",
    "gtable",
    "highr",
    "highs",
    "htmltools",
    "httpuv",
    "hyper2",
    "igraph",
    "isoband",
    "iterators",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labdsv",
    "labeling",
    "later",
    "lattice",
    "lifecycle",
    "magrittr",
    "maotai",
    "MASS",
    "Matrix",
    "matrixStats",
    "maxLik",
    "mclustcomp",
    "memoise",
    "mgcv",
    "mime",
    "miscTools",
    "mRMRe",
    "mvtnorm",
    "nlme",
    "numDeriv",
    "osqp",
    "otel",
    "partitions",
    "pkgconfig",
    "polynom",
    "pracma",
    "prettydoc",
    "promises",
    "R6",
    "RANN",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppDE",
    "RcppDist",
    "RcppEigen",
    "Rdimtools",
    "Rdpack",
    "rlang",
    "rmarkdown",
    "RSpectra",
    "Rtsne",
    "S7",
    "sandwich",
    "sass",
    "scales",
    "scs",
    "sets",
    "shiny",
    "slam",
    "sourcetools",
    "survival",
    "tinytex",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xtable",
    "yaml",
    "zoo"
  ],
  "_vignettes": [
    {
      "source": "UBayFS.Rmd",
      "filename": "UBayFS.html",
      "title": "A quick tour through UBayFS",
      "author": "Anna Jenul, Stefan Schrunner",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Requirements and dependencies",
        "Background",
        "Ensemble feature selection as likelihood",
        "Expert knowledge as prior",
        "Prior feature weights",
        "Feature set constraints",
        "Application of UBayFS",
        "Ensemble Training",
        "User knowledge",
        "Optimization and evaluation",
        "Shiny dashboard",
        "Conclusion",
        "References"
      ],
      "created": "2021-01-30 15:59:31",
      "modified": "2023-07-07 08:13:13",
      "commits": 39
    },
    {
      "source": "BFS_UBayFS.Rmd",
      "filename": "BFS_UBayFS.html",
      "title": "Block feature selection with UBayFS",
      "author": "Anna Jenul, Stefan Schrunner",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "UBayFS example",
        "Version (a): block list",
        "Version (b): block matrix",
        "Block-wise prior weights",
        "Evaluation of block feature selection results",
        "Conclusion"
      ],
      "created": "2022-07-21 09:49:41",
      "modified": "2022-12-14 17:29:29",
      "commits": 10
    }
  ],
  "_score": 5.113943352306837,
  "_indexed": true,
  "_nocasepkg": "ubayfs",
  "_universes": [
    "annajenul"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0",
      "date": "2026-06-02T09:38:27.000Z",
      "distro": "noble",
      "commit": "bb699ba57c2816747a01c51a06d4033794579835",
      "fileid": "95a37e126ef6ffec56e463f1ea5476f9ede7b08ccb49ad7878869965ffda3877",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/annajenul/actions/runs/26811049308"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0",
      "date": "2026-06-02T09:38:34.000Z",
      "distro": "noble",
      "commit": "bb699ba57c2816747a01c51a06d4033794579835",
      "fileid": "193cc7268fa7413082ab8ec071bc555c59ccac1ba9b22d04cd1fd9c1e210cabb",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/annajenul/actions/runs/26811049308"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0",
      "date": "2026-06-02T09:37:35.000Z",
      "commit": "bb699ba57c2816747a01c51a06d4033794579835",
      "fileid": "454ebce82134de80345a995db3ebccaa1554f6534aa2cba9f6f3761a2726ce31",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/annajenul/actions/runs/26811049308"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0",
      "date": "2026-06-02T09:37:53.000Z",
      "commit": "bb699ba57c2816747a01c51a06d4033794579835",
      "fileid": "8e6ff49730be04e256b80d58a6cbfcc104edc178426a75d0481917ae7ce85762",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/annajenul/actions/runs/26811049308"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0",
      "date": "2026-06-02T09:38:39.000Z",
      "commit": "bb699ba57c2816747a01c51a06d4033794579835",
      "fileid": "1508f4a406f1d7717087e7cd3d36df4a05eddae21993fd2bfaadb59e0be7ef8c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/annajenul/actions/runs/26811049308"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0",
      "date": "2026-06-02T09:36:56.000Z",
      "commit": "bb699ba57c2816747a01c51a06d4033794579835",
      "fileid": "3b78119ce4fe2cf737d63daa6f6935e07e2515d6cf5b62a9d95bb2af569c14d9",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/annajenul/actions/runs/26811049308"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0",
      "date": "2026-06-02T09:36:55.000Z",
      "commit": "bb699ba57c2816747a01c51a06d4033794579835",
      "fileid": "344bf0deb4f096f054c2a061ef5b5650351995fe25b98c525f272ce687f7ce90",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/annajenul/actions/runs/26811049308"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0",
      "date": "2026-06-02T09:36:48.000Z",
      "commit": "bb699ba57c2816747a01c51a06d4033794579835",
      "fileid": "a45586cd2b591afe8debbdba384d0e925b01ebfbfc75f30d8c3d654c32aa61dd",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/annajenul/actions/runs/26811049308"
    }
  ]
}